PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676725512
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 183aa    MW: 20161 Da    PI: 9.3703
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676725512genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00014101123123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++Cp+Cg  F+    L  H+r+H
  676725512 101 HTCPICGLEFPLGQALGGHMRKH 123
                79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.71E-748123No hitNo description
PfamPF139128.8E-124974IPR007087Zinc finger, C2H2
PROSITE profilePS501579.3695072IPR007087Zinc finger, C2H2
SMARTSM003550.545072IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.18101128IPR007087Zinc finger, C2H2
PfamPF139123.1E-9101125IPR007087Zinc finger, C2H2
SMARTSM003550.045101123IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MVARSDYIDR TVEVTSTKSE NLNRTVEDTA TCLMLLSRVG ECVRGESRVY RCKTCMKEFS  60
SFQALGGHRA SHRKPVNNSS DEQSSLSSGS VTKKSKKASS HTCPICGLEF PLGQALGGHM  120
RKHRSDKENG ALVTRSFLPE ELTTTITTLK KSSSGKRVGC FDLVSDSMES MINLKLELGR  180
TIY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591437.12e-87PREDICTED: zinc finger protein ZAT8-like
SwissprotQ9LX852e-72ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLA0A0D3A8Q32e-87A0A0D3A8Q3_BRAOL; Uncharacterized protein
STRINGBra018225.1-P2e-82(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.17e-58C2H2 family protein